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Mosaic: exploring reticulate protein family evolution
Using a Beagle to sniff for Bacterial Promoters
BioPatML & Diana-B
Correlating graph-theoretical centrality indices with interface residue propensity
Localization prediction of transmembrane proteins
Transmembrane proteins and the Translocon


Python course: An introduction into Python
Why to become a Pyologist: Perl is for Plumbers - Python is for Biologists

Software Development

Java: Programming in the large
Why files are evil and beyond files
Unit tests in scientific software development
Eclipse and JDT
Scientific Programming

Machine Learning

A most painless introduction into Conditional Random Fields
Non-linear optimization: An overview, problems and a guide
Kernel based data fusion - Discussion of a Paper by G. Lanckriet